cellseg: Multiclass Cell Segmentation

Introduction

cellseg is a PyTorch (torch) based deep learning package aimed at multiclass cell segmentation.

Installation

pip install cellseg

Or if you want to build from source

git clone git@github.com:Nelson-Gon/cellseg.git
cd cellseg
python setup.py install

Development stage

• [x] Read Tiff Images

• [x] Read Non Tiff Images

• [x] Write Data Transformers and Loaders

• [ ] Write functional model

• [ ] Modify model weights/layers

Usage

# imports data, utils, model
from cellseg import *